Bridging experimental and computational biology

Molecular and computational biologist with expertise in next generation sequencing, genomics, data analysis, and bioinformatics tool development. Passionate about uncovering novel biological insights through integrated approaches.

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Emily Weiss

About Me

Dedicated to excellence in every project I undertake

I’m a cofounder of an immune biology startup in the Bay Area (currently in stealth). My background is in molecular biology, computational biology, and the study of evolutionary innovations that can be translated into new therapeutic and biotechnological opportunities.

I build scalable Python-based pipelines and apply machine learning to turn complex biological data into actionable hypotheses. My work spans high-throughput genomics and transcriptomics, large-scale data integration, plant metabolic engineering, and microbiome science — with publications in top-tier journals including Nature Microbiology.

Outside of work, I enjoy foraging, rock climbing, and doting on my two house rabbits.

Ice climbing
In the lab
Cheese bacteria
Climbing in Red Rocks
House rabbits rule

Skills & Expertise

Core competencies that drive my professional practice

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Genomics & NGS

Short- and long-read sequencing, library preparation, genomics/transcriptomics analysis

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Bioinformatics

Python/R, data mining & visualization, workflow automation with Snakemake

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Molecular Biology

DNA/RNA extraction, PCR, cloning, transformation, Western & Northern blotting

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Cloud Computing

AWS cloud computing, version control with GitHub, machine learning applications

Research & Publications

Selected work demonstrating expertise in molecular and computational biology

Viral Structural Mimics

Computational Discovery of Viral Structural Mimics

Developed computational methods to identify viral structural mimics with therapeutic potential. Published in Arcadia Science (2025).

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Bacterial-Fungal Interaction

Bacterial-Fungal Interactions

Genome-wide analysis of bacterial mutant fitness revealed key genes in microbial interactions. Featured as cover article in Nature Microbiology.

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Cheese Microbiome Genomics

Cheese Microbiome Genomics

Multi-platform metagenomics study yielding high-quality genomic catalog and in vitro model for cheese communities. Published in mSystems.

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Let's Connect!

I'm always interested in discussing new opportunities and innovative projects in molecular and computational biology. Whether you have a specific question, want to explore collaborative possibilities, or just want to talk about how delightful house rabbits are, I'd love to hear from you.

Location: Oakland, CA, USA